PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc04_g16290

Common Name

GSCOC_T00035715001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

NAC

Protein Properties

Length: 356aa MW: 39654.9 Da PI: 8.2947

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc04_g16290	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	173	9.2e-54	17	143	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrFhPtdeel+++yL kkv ++++++ +i evd++kvePwdLp k+k +ekewyfF rdkky+tg r+nrat++gyWkatgkdke+++ +++ Cc04_g16290 17 LPPGFRFHPTDEELITHYLSKKVVDNSFSA-IAIGEVDMNKVEPWDLPWKAKMGEKEWYFFGVRDKKYPTGLRTNRATAKGYWKATGKDKEIFR-GKS 112 79***********************999.88***********888999************************************.999 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrle 129 lvg+kktLvfykgrapkgekt+Wv he+rle Cc04_g16290 113 LVGMKKTLVFYKGRAPKGEKTNWVTHEFRLE 143 **************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	9.15E-60	14	167	IPR003441	NAC domain
PROSITE profile	PS51005	57.604	17	167	IPR003441	NAC domain
Pfam	PF02365	1.8E-26	18	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MENYSVLVNG DDHQLDLPPG FRFHPTDEEL ITHYLSKKVV DNSFSAIAIG EVDMNKVEPW 60 DLPWKAKMGE KEWYFFGVRD KKYPTGLRTN RATAKGYWKA TGKDKEIFRG KSLVGMKKTL 120 VFYKGRAPKG EKTNWVTHEF RLEGKFSLQN LPKTAKNEWV ICRVFQKTAG GKKIHISGLL 180 RSNSIETEFA PSLLPPLMDS PTYNGASSKP TSWPESGHVH CFSSPFSSAQ NKSLQEDMLL 240 SYFSNPAFAP STSNPLDLGP VQGNYQFPGS IPMQDTSALR TLIESCGQNM LKQSFKTEQQ 300 ERVSASQETG ISTDMNTEIS SVVSNLEMGR KSAVDQEPPS TSVGPQGLVD CLWYS*

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MENYSVLVNG DDHQLDLPPG FRFHPTDEEL ITHYLSKKVV DNSFSAIAIG EVDMNKVEPW  60
DLPWKAKMGE KEWYFFGVRD KKYPTGLRTN RATAKGYWKA TGKDKEIFRG KSLVGMKKTL  120
VFYKGRAPKG EKTNWVTHEF RLEGKFSLQN LPKTAKNEWV ICRVFQKTAG GKKIHISGLL  180
RSNSIETEFA PSLLPPLMDS PTYNGASSKP TSWPESGHVH CFSSPFSSAQ NKSLQEDMLL  240
SYFSNPAFAP STSNPLDLGP VQGNYQFPGS IPMQDTSALR TLIESCGQNM LKQSFKTEQQ  300
ERVSASQETG ISTDMNTEIS SVVSNLEMGR KSAVDQEPPS TSVGPQGLVD CLWYS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	9e-54	14	173	17	174	NAC domain-containing protein 19
3swm_B	9e-54	14	173	17	174	NAC domain-containing protein 19
3swm_C	9e-54	14	173	17	174	NAC domain-containing protein 19
3swm_D	9e-54	14	173	17	174	NAC domain-containing protein 19
3swp_A	9e-54	14	173	17	174	NAC domain-containing protein 19
3swp_B	9e-54	14	173	17	174	NAC domain-containing protein 19
3swp_C	9e-54	14	173	17	174	NAC domain-containing protein 19
3swp_D	9e-54	14	173	17	174	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027121699.1	0.0	NAC domain-containing protein 100-like
Swissprot	Q9FLJ2	1e-132	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A068UVF5	0.0	A0A068UVF5_COFCA; Uncharacterized protein
STRING	cassava4.1_010528m	1e-163	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-135	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]