PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc04_g16590

Common Name

GSCOC_T00035764001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

Nin-like

Protein Properties

Length: 335aa MW: 37875.9 Da PI: 6.3207

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc04_g16590	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	84.9	7.2e-27	149	199	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +k++s +++s+yF++pi++AAkeL+v+lT+LK++CR++GI+RWPhRk+ sl Cc04_g16590 149 SKNLSRKTISNYFYMPITQAAKELNVGLTLLKKRCRELGIRRWPHRKLMSL 199 699*********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.859	131	220	IPR003035	RWP-RK domain
Pfam	PF02042	1.7E-21	151	199	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0051302	Biological Process	regulation of cell division

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MGTQPFQSWS KFQVMTKEED VYPFSFPTQL SPLEFSTYNP GCAGSGSQLD FPFRDPDFDA 60 FPIMGSCLND PSYASLDIDP SHYVFQDSWQ GFHGSGFRLG NEKSPEFDIQ NQQLLLAGSN 120 EQLTSQEEVV VEEKGMKKAR EEKGGTISSK NLSRKTISNY FYMPITQAAK ELNVGLTLLK 180 KRCRELGIRR WPHRKLMSLQ TLIKNVQELA KEGGEGAERK FREAIDILEH EKKMLEEIPH 240 LQLEDNTKRL RQACFKANYK KRKLMGMVKE SPSHSGVNPH EVNALAIPDF GSRVDDDQQE 300 EELKILFSDC FPSPNTLISG LPCTNLCKHV ANTL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027122331.1	0.0	protein RKD3-like
TrEMBL	A0A068UVI1	0.0	A0A068UVI1_COFCA; Uncharacterized protein
STRING	EOY21863	6e-82	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4274	21	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	3e-54	RWP-RK domain-containing protein