PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc04_g16930
Common NameGSCOC_T00035813001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 249aa    MW: 27277.4 Da    PI: 4.7564
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc04_g16930genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.33.6e-053988154
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                 +r  + erE+  R+++N+ f  L   l  +     + + Ka++L +A++++k++
  Cc04_g16930 39 KRIHKAEREKMKREHLNDLFLSLANALEVS----EETNGKASVLSEAIRFVKDM 88
                 688899*********************998....67899999*******99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.14E-1136108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.53E-53693No hitNo description
Gene3DG3DSA:4.10.280.107.6E-838109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.4293888IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MSMSSEESPE STLEPVSRVV QTPTTKCQSG RKHQGKVPKR IHKAEREKMK REHLNDLFLS  60
LANALEVSEE TNGKASVLSE AIRFVKDMLA QIESLRSENA ALSSESQYMT MEKEELQDET  120
NSLESQIAEL QNQVRERVGE AELDLNATPG GQFDGSTPHQ VDDCFRFPAL GPAIQQPQNV  180
KPVYVIPLCS DPSVFQQPGN AETASSPLTT VSKPQARYPT PADTWTSQLL EKHPDLGGGD  240
EHCGGRSC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027121478.10.0transcription factor bHLH47-like
RefseqXP_027121479.10.0transcription factor bHLH47-like
TrEMBLA0A068UV950.0A0A068UV95_COFCA; Uncharacterized protein
STRINGXP_009798054.17e-76(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43071934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47640.32e-51bHLH family protein