PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc05_g00410

Common Name

GSCOC_T00017074001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

NF-YB

Protein Properties

Length: 257aa MW: 28723.2 Da PI: 7.2629

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc05_g00410	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	121.7	3.1e-38	51	141	7	97
NF-YB 7 flPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 ++Pi+n+ rimk++lP nak+s++ k t+qec se+i f+t+e +++c+ e+rkti+++dll+a a lGf +yv pl+++l++yr+ e++k Cc05_g00410 51 LVPITNLLRIMKRILPPNAKVSEEVKTTIQECLSEYIHFITGEVNERCHCEQRKTITAEDLLYAYARLGFSNYVGPLTLFLERYRQNEAAK 141 58***********************************************************************************999765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	9.89E-27	50	145	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	1.9E-34	51	142	IPR009072	Histone-fold
Pfam	PF00808	2.1E-18	52	114	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	6.1E-11	79	97	No hit	No description
PRINTS	PR00615	6.1E-11	98	116	No hit	No description
PRINTS	PR00615	6.1E-11	117	135	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MTKIYGFNVN FSFSDSRTRR CCNPSASGSN VNNNNNSGTP EPYPRLHPGY LVPITNLLRI 60 MKRILPPNAK VSEEVKTTIQ ECLSEYIHFI TGEVNERCHC EQRKTITAED LLYAYARLGF 120 SNYVGPLTLF LERYRQNEAA KNIIHGDASV RRTTYFPDAQ GPPPLLTSTP PLLPLMNLTF 180 QVGEDHQGFF INPALMLNDL YFQNVRETDH GDRFDVVGSS SNPDFPALAP FSYGFHTRAS 240 SPPGSYTYGH GPNHGQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	3e-37	51	136	12	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027064455.1	0.0	nuclear transcription factor Y subunit beta-like
TrEMBL	A0A068V5L4	0.0	A0A068V5L4_COFCA; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47670.2	7e-39	nuclear factor Y, subunit B6