PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc05_g01050

Common Name

GSCOC_T00000904001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

G2-like

Protein Properties

Length: 69aa MW: 7925.4 Da PI: 11.0122

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc05_g01050	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	93.2	2.1e-29	18	67	2	51
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 prlrWtpeLHe+Fveave+LGG++kAtPk+i ++m+v gL ++hvkSHLQ Cc05_g01050 18 PRLRWTPELHEHFVEAVEHLGGKQKATPKRIIQMMGVRGLQMSHVKSHLQ 67 8************************************************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.679	14	68	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.5E-26	15	67	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.3E-22	18	68	IPR006447	Myb domain, plants
SuperFamily	SSF46689	7.17E-14	18	67	IPR009057	Homeodomain-like
Pfam	PF00249	3.4E-9	19	67	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 69 aa Download sequence Send to blast
METCIKTGIR KYKKSSFPRL RWTPELHEHF VEAVEHLGGK QKATPKRIIQ MMGVRGLQMS 60 HVKSHLQV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-18	19	67	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-18	19	67	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	3e-18	19	67	3	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-18	19	67	3	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-18	19	67	3	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-18	19	67	3	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-18	19	67	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-18	19	67	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-18	19	67	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-18	19	67	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-18	19	67	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-18	19	67	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027062707.1	5e-43	uncharacterized protein LOC113689075
Swissprot	Q700D9	6e-21	MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBL	A0A068VA46	1e-42	A0A068VA46_COFCA; Uncharacterized protein
STRING	VIT_12s0028g00980.t01	1e-30	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9459	13	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02060.1	2e-23	G2-like family protein