PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc05_g01060

Common Name

GSCOC_T00000905001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

G2-like

Protein Properties

Length: 102aa MW: 11650.6 Da PI: 10.6538

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc05_g01060	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	99.8	1.9e-31	18	71	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLHe+FveaveqLGG+++AtP++i ++m+v gL ++hvkSHLQ+YR+ Cc05_g01060 18 PRLRWTPELHEHFVEAVEQLGGKHEATPRRIIQMMGVRGLQVSHVKSHLQMYRS 71 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.237	14	74	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.9E-29	15	75	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.88E-16	18	75	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.5E-23	18	72	IPR006447	Myb domain, plants
Pfam	PF00249	2.9E-10	19	70	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 102 aa Download sequence Send to blast
MESCNKTGVR QYKKSACPRL RWTPELHEHF VEAVEQLGGK HEATPRRIIQ MMGVRGLQVS 60 HVKSHLQMYR SMKKRTTIHL VVPAMLHEKE TPDSVVPSPP R*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-19	18	75	3	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-19	18	75	3	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-19	18	75	3	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-19	18	75	3	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-19	18	75	3	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-19	18	75	3	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-19	18	75	3	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-19	18	75	3	60	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027101755.1	3e-62	uncharacterized protein LOC113722706
Swissprot	Q700D9	8e-23	MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBL	A0A068VCM9	1e-68	A0A068VCM9_COFCA; Uncharacterized protein
STRING	POPTR_0002s05770.1	9e-33	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9459	13	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	1e-26	G2-like family protein