PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc05_g01070

Common Name

GSCOC_T00000908001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

G2-like

Protein Properties

Length: 102aa MW: 11766.9 Da PI: 10.6821

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc05_g01070	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.3	1.3e-31	18	71	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLHe+F+eave+LGG++kAtPk i+++m+v gL ++hvkSHLQ+YR Cc05_g01070 18 PRLRWTPELHEHFIEAVEHLGGKHKATPKGIVQMMGVSGLQMSHVKSHLQMYRN 71 8****************************************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.869	14	74	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.8E-29	15	75	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.34E-15	18	75	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.6E-24	18	72	IPR006447	Myb domain, plants
Pfam	PF00249	8.2E-10	19	70	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 102 aa Download sequence Send to blast
MEMCNRTGVR KYKKSAFPRL RWTPELHEHF IEAVEHLGGK HKATPKGIVQ MMGVSGLQMS 60 HVKSHLQMYR NMKKRATINL VVPMKLHEEE TQDAVVWSLT R*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-20	19	75	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-20	19	75	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-20	19	75	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-20	19	75	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-20	19	75	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-20	19	75	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-20	19	75	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-20	19	75	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027062654.1	2e-69	probable transcription factor KAN3
Swissprot	Q700D9	5e-23	MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBL	A0A068VA66	2e-69	A0A068VA66_COFCA; Uncharacterized protein
STRING	XP_009785228.1	3e-34	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9459	13	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02060.1	5e-26	G2-like family protein