PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc05_g01340
Common NameGSCOC_T00018209001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family NAC
Protein Properties Length: 304aa    MW: 34266.4 Da    PI: 8.9859
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc05_g01340genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.92.1e-49191482128
          NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.. 95 
                   pGfrFhPtdeelv +yL++kve+k+l++ e i++vdiyk++PwdLp  kv   ++ke yfF+ r +ky+++ r+nr+t sg+Wkatg dk+++s+  
  Cc05_g01340  19 LPGFRFHPTDEELVGFYLRRKVERKPLRI-ELITQVDIYKCDPWDLPlPKVGVvGDKEFYFFCMRGRKYRNSVRPNRVTGSGFWKATGIDKPIYSSge 115
                  69***************************.89**************95343333899**************************************855 PP

          NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                  +++ +glkk+Lv+y+g+a kg+ktdW+mhe+rl
  Cc05_g01340 116 TTQCIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 148
                  5566***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100552.25718181IPR003441NAC domain
SuperFamilySSF1019411.05E-5418181IPR003441NAC domain
PfamPF023657.2E-2520148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MEEFKSSNKN HKDDDGVVLP GFRFHPTDEE LVGFYLRRKV ERKPLRIELI TQVDIYKCDP  60
WDLPLPKVGV VGDKEFYFFC MRGRKYRNSV RPNRVTGSGF WKATGIDKPI YSSGETTQCI  120
GLKKSLVYYR GSAGKGTKTD WMMHEFRLPP GWTHSTSTQP NPRNNIAQET DDWTLCRIFK  180
RNASSKRYKP DLKHACTKGG SGAASSKPCS LQSQNSCHPY TTLEDVGFQQ RTNAAAGIDV  240
NHSSQFLAAQ EQILLVAQTS YSSSSSNFWN LNGDEFFRDG RWDELSSVVD SAADMSNPFA  300
RSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-502018719171NO APICAL MERISTEM PROTEIN
1ut4_B3e-502018719171NO APICAL MERISTEM PROTEIN
1ut7_A3e-502018719171NO APICAL MERISTEM PROTEIN
1ut7_B3e-502018719171NO APICAL MERISTEM PROTEIN
4dul_A3e-502018719171NAC domain-containing protein 19
4dul_B3e-502018719171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027063336.10.0transcription factor JUNGBRUNNEN 1-like
SwissprotQ9SK551e-87NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A068V7420.0A0A068V742_COFCA; Uncharacterized protein
STRINGVIT_12s0028g00860.t011e-110(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16972469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.11e-89NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]