PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc05_g01990
Common NameGSCOC_T00040825001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family CO-like
Protein Properties Length: 413aa    MW: 44877.3 Da    PI: 5.3138
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc05_g01990genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.96.5e-064688440
     zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                  +C++++ +++   C + +  lC++C   +H g      H+++
  Cc05_g01990 46 LVCERCNLQPAFVRCIEEKISLCPNCDWLGHGGsntgstHKRQ 88
                 68*****************************558888888875 PP
2CCT639e-22355398144
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                  R +a++RYkeK+ktRkFeKk+rY+sRKa+A+ R RvKGrFvk+ 
  Cc05_g01990 355 RSNAVMRYKEKKKTRKFEKKVRYASRKARADVRRRVKGRFVKAG 398
                  899**************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.371147IPR000315B-box-type zinc finger
CDDcd000214.11E-6447No hitNo description
SMARTSM003361.8E-6447IPR000315B-box-type zinc finger
PROSITE profilePS5101715.398355397IPR010402CCT domain
PfamPF062032.8E-16355397IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MGYMCDFCGE QRSIVYCRSD AASLCLSCDC NVHSANALSR RHSRTLVCER CNLQPAFVRC  60
IEEKISLCPN CDWLGHGGSN TGSTHKRQAV SCYSGCPSAA ELSTIWPFFL DFPLVGDSKC  120
EQIMGSMSIN EVSRDSQGAQ GKKNIQDASV AVGVTNIQNV DKSTAWTGSS MLPYDAKLQN  180
IELPAASTCA GSPKLSCFGA KGQTVCEDDS FYENFNMDEV DLSIENYDEL FGAALDNPEK  240
LFENDDIDGL FGMEISGADS NCQDAHLMEG SSMGRINGIQ PACSTAASAD SMMSCKTEPN  300
ICFARQAHSS LSFSGLTGES SAGDYQDCGA SSFLLMGEPP WCPPCPESSN PASSRSNAVM  360
RYKEKKKTRK FEKKVRYASR KARADVRRRV KGRFVKAGDA YDYDPMTPTR SY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027064634.10.0zinc finger protein CONSTANS-LIKE 9-like isoform X1
SwissprotQ9SSE51e-144COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A068V1740.0A0A068V174_COFCA; Uncharacterized protein
STRINGXP_009768363.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12702468
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.11e-119B-box type zinc finger protein with CCT domain