PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc05_g02170
Common NameGSCOC_T00018415001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family C2H2
Protein Properties Length: 175aa    MW: 19302.4 Da    PI: 10.7654
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc05_g02170genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.00045173123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C+ C+k F++   L  H  +H
  Cc05_g02170 51 FECKTCNKKFPTFQALGGHRASH 73
                 89**********99999998887 PP
2zf-C2H212.30.0005296118123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++Cp Cg  F+    L  H+r+H
  Cc05_g02170  96 HECPFCGLEFPLGQALGGHMRRH 118
                  79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.99E-949118No hitNo description
PfamPF139122.5E-125075IPR007087Zinc finger, C2H2
PROSITE profilePS501579.8065178IPR007087Zinc finger, C2H2
SMARTSM003550.0985173IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805373IPR007087Zinc finger, C2H2
PfamPF139125.0E-996120IPR007087Zinc finger, C2H2
SMARTSM003550.07296118IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028098118IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MTVKRSREEA LAAETVEETA AINLLMLLSR VGEATTSAAA DQAATPSGRV FECKTCNKKF  60
PTFQALGGHR ASHKKLKLMA ELLTQPSNSP RKPKKHECPF CGLEFPLGQA LGGHMRRHRA  120
AILEGRREID ESRGRKVAVP VLKRSNSSKR VFGLDLNLSP FENDLRQLMK DPLR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027063234.11e-121zinc finger protein ZAT8-like
RefseqXP_027175180.11e-118zinc finger protein ZAT1
TrEMBLA0A068V7211e-123A0A068V721_COFCA; Uncharacterized protein
STRINGXP_010043581.11e-52(Eucalyptus grandis)
STRINGXP_010043584.19e-53(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36624150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.14e-35C2H2 family protein