PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc05_g02250
Common NameGSCOC_T00018428001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family C3H
Protein Properties Length: 166aa    MW: 17732.4 Da    PI: 7.9417
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc05_g02250genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.51.5e-10135158125
                  --S---SGGGGTS--TTTTT-SS-S CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                  +kt+ C +f + G C +GdrC+FaH
  Cc05_g02250 135 FKTKVCENFVK-GSCTFGDRCHFAH 158
                  69*********.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF547913.65E-1552134IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.104.7E-1657129IPR004088K Homology domain, type 1
SMARTSM003222.4E-1057127IPR004087K Homology domain
PROSITE profilePS5008413.69158122IPR004088K Homology domain, type 1
PfamPF000131.1E-1060123IPR004088K Homology domain, type 1
CDDcd001052.01E-1260123No hitNo description
Gene3DG3DSA:4.10.1000.106.3E-16130164IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-9132164IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7134160IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.877134161IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-8135158IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MDHLLQLLKL VSATNKIQLK GVNLEINAIL LMVLGARPAP VHEDPHAKGP PPGRFGASAT  60
AKISMDASLA GAIIGKGGVN SKHICHTTGA KLAIRDHDSD PNSENIKLEG TFNQIKQATQ  120
MVCELIANVT PASNFKTKVC ENFVKGSCTF GDRCHFAHEE EELRL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027089825.12e-65zinc finger CCCH domain-containing protein 14-like
RefseqXP_027177869.12e-65zinc finger CCCH domain-containing protein 14-like
SwissprotQ69XQ36e-52C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44
TrEMBLA0A068V7K91e-118A0A068V7K9_COFCA; Uncharacterized protein
STRINGVIT_08s0007g06400.t014e-54(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.11e-45C3H family protein