PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc05_g04960
Common NameGSCOC_T00035041001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB_related
Protein Properties Length: 76aa    MW: 8503.35 Da    PI: 4.449
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc05_g04960genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.62.4e-122869346
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                      ++++E+ l+++ +++ G++ W++Ia +++ gRt+k++ ++w++
      Cc05_g04960 28 HFSEDEEILIIRMFNLVGKR-WSLIAGRIP-GRTAKEIEEYWNT 69
                     69******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.5432475IPR017930Myb domain
SMARTSM007171.3E-82573IPR001005SANT/Myb domain
SuperFamilySSF466898.58E-102869IPR009057Homeodomain-like
PfamPF002492.3E-112969IPR001005SANT/Myb domain
CDDcd001671.40E-92969No hitNo description
Gene3DG3DSA:1.10.10.601.9E-152969IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 76 aa     Download sequence    Send to blast
MADSDQSTTL NEKSAGSQED KSQDSELHFS EDEEILIIRM FNLVGKRWSL IAGRIPGRTA  60
KEIEEYWNTR SATSP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027063506.13e-49MYB-like transcription factor ETC1
RefseqXP_027127607.13e-49MYB-like transcription factor ETC1
RefseqXP_027170767.13e-49MYB-like transcription factor ETC1
TrEMBLA0A068UW087e-48A0A068UW08_COFCA; Uncharacterized protein
STRINGPOPTR_0004s02060.11e-29(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA65791932
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46410.13e-16MYB_related family protein