PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc05_g05160
Common NameGSCOC_T00035071001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family CO-like
Protein Properties Length: 428aa    MW: 46228.9 Da    PI: 5.9406
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc05_g05160genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.22.6e-064575333
     zf-B_box  3 erkCpeHeekelqlfCedCqqllCedCllee 33
                   +C+++++++++  C +++  lC+ C  ++
  Cc05_g05160 45 SLICDKCNSQPATVRCLEDKISLCQGCNWNG 75
                 569************************7555 PP
2CCT62.71.1e-21371414144
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                  R++a++RY+eK+ktR F K+irY+sRKa+A++R+RvKGrFvk+ 
  Cc05_g05160 371 RDKAKMRYNEKKKTRTFGKQIRYASRKARADTRKRVKGRFVKAG 414
                  899**************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501198.816147IPR000315B-box-type zinc finger
SMARTSM003361.1E-6147IPR000315B-box-type zinc finger
CDDcd000215.08E-4347No hitNo description
PROSITE profilePS5101714.684371413IPR010402CCT domain
PfamPF062031.3E-16371413IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MEPLCELCGV MRGVVYCRSD AARLCLQCDS CVHSANSLSR RHDRSLICDK CNSQPATVRC  60
LEDKISLCQG CNWNGNGCSG PGHHRQKLTF YSGCPSLAEL SRIWSSILDA PVPSNFDSSY  120
STLNMNENCM RSCSEPRGGE GSVGMVANRL NELASCVKFE PWITPPPVIP ANLDHIVPCS  180
RDQTPLFSEG SSLPKGSPTL KDLGLQDGDV LCEGVDVDDV ALIFDSGYEI PGNSEVHSRY  240
NSEDGALSSL VMEKNLSVSE SNGHVENTFE ASSAGQAEGI GFQSSRIVGS ASLMQTMNAS  300
PNCMLMNPSC NRNIGLGFPT GQVPSSISLS LSNITGESSA ADYQDCGLSP AFLTGESPWD  360
SGLETSCPQA RDKAKMRYNE KKKTRTFGKQ IRYASRKARA DTRKRVKGRF VKAGEAYDYD  420
PLRTGEF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027172036.10.0putative zinc finger protein CONSTANS-LIKE 11
TrEMBLA0A068UW260.0A0A068UW26_COFCA; Uncharacterized protein
STRINGevm.model.supercontig_8.2391e-180(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42311726
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21880.11e-101B-box type zinc finger protein with CCT domain