PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc05_g05890
Common NameGSCOC_T00035176001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB_related
Protein Properties Length: 242aa    MW: 27674.3 Da    PI: 8.5967
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc05_g05890genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.69.3e-1176110945
                      HHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   9 dellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      ++l++++++q+G++ W++Ia +++ gRt++++k +w+
      Cc05_g05890  76 QDLIIKLHEQFGNR-WSAIAWKLP-GRTDNEVKIYWH 110
                      5799**********.*********.***********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.4E-8744IPR009057Homeodomain-like
SuperFamilySSF466897.65E-1412109IPR009057Homeodomain-like
SMARTSM00717111363IPR001005SANT/Myb domain
PROSITE profilePS5129412.20860117IPR017930Myb domain
SMARTSM007173.1E-565115IPR001005SANT/Myb domain
PfamPF002491.1E-876110IPR001005SANT/Myb domain
CDDcd001675.99E-676110No hitNo description
Gene3DG3DSA:1.10.10.606.4E-1577113IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MVRSSRIDKN GLKEGAWNEE EDNKLRAYAL RYGHWNWRQL PKFAELKLTK KDLELQLVVR  60
RNLTKGDVYS ELGSQQDLII KLHEQFGNRW SAIAWKLPGR TDNEVKIYWH GRLSKRLNQA  120
RTLTEIIMEK TSEKSQHVVQ GNHQLKQSPA MSAYDSNQKR EMGPNIAAAA APLACSELCS  180
IRSSDSTLSD SNISVDYPFT EPFETFWTQP FDLDTSNKDN AYWLITATGG RICLLFLVFC  240
S*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027172096.11e-106transcription factor MYB14-like
TrEMBLA0A068UTX80.0A0A068UTX8_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79180.17e-29myb domain protein 63