PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc05_g07290
Common NameGSCOC_T00042256001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 154aa    MW: 17734.4 Da    PI: 9.7274
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc05_g07290genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.35.6e-081562554
                 HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHH CS
          HLH  5 hnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksL 54
                 + + E+ RR+r ++ +++L +llP++   +sk  l   +   +A++YIks+
  Cc05_g07290 15 KRIKEKDRRHRFKNLYSQLYSLLPSD---SSKEvLPVPDKIGEAINYIKSM 62
                 6789*********************9...77778***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.2451062IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-101282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-71576IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.40E-41567No hitNo description
PfamPF000106.3E-51562IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MEKFHPSTSN SKPEKRIKEK DRRHRFKNLY SQLYSLLPSD SSKEVLPVPD KIGEAINYIK  60
SMERKLENYK QMKEKLLCGR RRYSSIKSSE LMNVEVHDMG PDTDMILISG LKEPASFYGK  120
IRLLHEEGFE VVNANFSNNG NSMLQVVHEK VSI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027063348.11e-107transcription factor bHLH162-like
TrEMBLA0A068V2L51e-107A0A068V2L5_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52971427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.14e-18bHLH family protein