PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc05_g07300
Common NameGSCOC_T00042257001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 220aa    MW: 24562.7 Da    PI: 6.6739
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc05_g07300genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH222.9e-071462454
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHH CS
          HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksL 54
                  +++ E++RRd+++s  +eL +llP++    sk      + L +A+++Iks+
  Cc05_g07300 14 GKKISEKNRRDQMKSLCAELYRLLPND---ISKGfCPLPDKLGEAINHIKSM 62
                 57899*********************8...4444477788899999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.1121062IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-81186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-41362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-71477IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.12E-51567No hitNo description
SMARTSM003530.00841668IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MKKFHASASN TKTGKKISEK NRRDQMKSLC AELYRLLPND ISKGFCPLPD KLGEAINHIK  60
SMEKKLENYK EWKEKLLFGK RSCSSTSSES NNSSKLTNVE VQDIGPDANV ILISGLEEQA  120
SFYGIIPRLH EEGFEVVNAN FSNNGTSMLQ VVHQKVGAST SGSETTAVSK RLKELIYGYS  180
QGEVESNLDL WDFRIEPDLL TSDFFGPFTT DNFCLPQQH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11824EKNRRDQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027172131.11e-145transcription factor bHLH162-like
TrEMBLA0A068V4L01e-162A0A068V4L0_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52971427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.11e-18bHLH family protein