PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc05_g07320

Common Name

GSCOC_T00042259001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 225aa MW: 25493 Da PI: 6.529

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc05_g07320	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.2	8.4e-10	15	62	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksL 54 ++E++RR+++++ +++L l+P++ +sk l+ + +A++YIks+ Cc05_g07320 15 RRIVEKNRRSHMKDLYARLYGLVPSD---SSKEnLTVPDQIDEAINYIKSM 62 5799*******************7...55555*************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.83E-11	9	79	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.376	10	62	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.37E-5	12	62	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.6E-11	13	76	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.1E-6	15	63	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MERFHPSTSN PKMERRIVEK NRRSHMKDLY ARLYGLVPSD SSKENLTVPD QIDEAINYIK 60 SMEKKLEKCK EKKEKLLFGK RPYSGATGET TKITNVEVHD MGPNLDVILL NGLEEQASFY 120 GIIRLLCKEG FEVVNANFSS NGNSVLQVVH DKGGISTSRT ETTAVAKRLK ELIYGYSRGE 180 VESRLDSWVE SRLGPWDFEI EPDILNSNVL ELMSPGQFCF LQQL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027063507.1	1e-166	transcription factor bHLH162-like
TrEMBL	A0A068V1Z5	1e-165	A0A068V1Z5_COFCA; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5297	14	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	2e-19	bHLH family protein