PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc05_g07770

Common Name

GSCOC_T00016779001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

NAC

Protein Properties

Length: 272aa MW: 30579.5 Da PI: 8.1339

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc05_g07770	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	103.1	3.6e-32	62	202	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......sgyWk 84 lp+G++F+P+d+e++ e+L++kv+++ ++++ + ++ +i+ ++P++Lp v+++ +fF++ +k+y+tg+rk+r+++ + +W+ Cc05_g07770 62 LPAGVKFDPSDQEIL-EHLEAKVRSDVhklhplIDEFIHtLEGEnGICCTHPEKLP-GVSKDGLVRHFFHRPSKAYTTGTRKRRKVHtdidgcETRWH 157 799*********9.99**9995554332222222443336******.555666688**************755457666788 PP NAM 85 atgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +tgk+++v + kg+++g k+Lv+y gr++k+ekt+Wvmh+y+l Cc05_g07770 158 KTGKTRPVAV-KGKVKGFEKILVLYtnYGRQRKPEKTNWVMHQYHL 202 ********.999*******66589************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.93E-37	57	221	IPR003441	NAC domain
PROSITE profile	PS51005	32.254	62	221	IPR003441	NAC domain
Pfam	PF02365	7.5E-15	63	202	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MTCCSDCSNE RTASRRLPTS PDHHDNANNH ESPKSKQMMA CPSCGLTLQS PEKAGIHDLP 60 GLPAGVKFDP SDQEILEHLE AKVRSDVHKL HPLIDEFIHT LEGENGICCT HPEKLPGVSK 120 DGLVRHFFHR PSKAYTTGTR KRRKVHTDID GCETRWHKTG KTRPVAVKGK VKGFEKILVL 180 YTNYGRQRKP EKTNWVMHQY HLGNNEDEKE GELVVSKVFY QTQPRQCGSL IKDSPVKGNG 240 RIGHEGSHLN NSTFVEYYNS ALISFDQCEE V*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027063497.1	0.0	NAC domain-containing protein 73-like isoform X1
Refseq	XP_027127681.1	0.0	NAC domain-containing protein 73-like isoform X1
Refseq	XP_027157074.1	0.0	NAC domain-containing protein 73-like
Refseq	XP_027172549.1	0.0	NAC domain-containing protein 73-like
Swissprot	O49459	1e-116	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	A0A068V5D4	0.0	A0A068V5D4_COFCA; Uncharacterized protein
STRING	XP_002517849.1	1e-135	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2875	24	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	1e-118	NAC domain containing protein 73

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]