PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc05_g07790
Common NameGSCOC_T00016782001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family C2H2
Protein Properties Length: 569aa    MW: 63304.8 Da    PI: 10.0309
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc05_g07790genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.3e-05181201323
                  ETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                  C++Cgk F r  nL+ H r H
  Cc05_g07790 181 CEICGKGFQRDQNLQLHRRGH 201
                  *******************88 PP
2zf-C2H213.20.00027255277123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC++C+k++  +s+ k H +t+
  Cc05_g07790 255 WKCEKCSKRYAVQSDWKAHSKTC 277
                  58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.47E-6178201No hitNo description
Gene3DG3DSA:3.30.160.605.1E-5178201IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.489179201IPR007087Zinc finger, C2H2
SMARTSM003550.076179201IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280181201IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.9E-4243276IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.47E-6250275No hitNo description
SMARTSM00355130255275IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MSAGCYVNSD KPTPLPQKTR KEKSKEKLSC RLQLSLFTAS HERIAFYLDR KHTLNSHLSS  60
FTLLLIPITG CHKHIKTQRI LHFSASLVKV DIIAKRLNQA LQKAKDSSED DRGSNLKWFH  120
PNSNRRSESS SSKEEEKPSR NTRQRILPFY IPFLFTFFFD PEAEVIALSP KTLMATNRFL  180
CEICGKGFQR DQNLQLHRRG HNLPWKLKQR TSKEVRKRVY VCPEKSCVHH HPSRALGDLT  240
GIKKHFCRKH GEKKWKCEKC SKRYAVQSDW KAHSKTCGTR EYKCDCGTIF SRRDSFITHR  300
AFCDALAEET ARVTAASNVV AANSINYHFV GASLGPGMGQ HFASMFKPIS TNNETPANPI  360
RQGLSLWMGG HGLSQTQESI GNNNLQEIHH QLNPVVSTSG LVFTTDPFVK LTNNISSLPL  420
SNVAKDGGSQ VISVPSLFST QHQSHQTHST ANMSATALLQ KAAQMGATTT DTSFLGSFGL  480
KCNDSQIQDG NRYCSPYGGT ATSVATALQS SVTDHLSTLN ELQMYPSKRR HIQVDQDSTP  540
TTGGGQTRDF LGVGIQSICH PSSINGWI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-36251318370Zinc finger protein JACKDAW
5b3h_F3e-36251318370Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00125DAPTransfer from AT1G03840Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269|PubMed:21935722}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027062624.10.0zinc finger protein MAGPIE-like
SwissprotQ9ZWA61e-151IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBLA0A068V7J80.0A0A068V7J8_COFCA; Uncharacterized protein
STRINGEOX995370.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-144C2H2 family protein
Publications ? help Back to Top
  1. Muñoz-Strale D,León G
    Identification of two highly specific pollen promoters using transcriptomic data.
    Plant Physiol. Biochem., 2014. 83: p. 292-9
    [PMID:25208507]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]