PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc05_g08060

Common Name

GSCOC_T00016815001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

TCP

Protein Properties

Length: 324aa MW: 35926.8 Da PI: 7.6075

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc05_g08060	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	117.8	1.4e-36	25	124	1	90
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..................ssssaseceaessss 80 a+g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l+++ + Cc05_g08060 25 ATGRKDRHSKVYTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKNAIDKLAELphnhpneislmaapstdsN-------------- 108 589**************************************************************5555554444444332221.............. PP TCP 81 sasnsssg..........ka 90 ++s+ ++ Cc05_g08060 109 ----PGSAsgcqgfeqrsES 124 ....1111122232221111 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.5E-32	26	133	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	32.793	28	86	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MKRAGGGGDG QGEIIQVQGG HILRATGRKD RHSKVYTSKG PRDRRVRLSA HTAIQFYDVQ 60 DRLGYDRPSK AVDWLIKKAK NAIDKLAELP HNHPNEISLM AAPSTDSNPG SASGCQGFEQ 120 RSESSSLYAI QRHQLHDNPN GNSGVIPPEV DTQSIADTMK TFFPVSPGNS LMNMQSYQHD 180 RMSRQPSIQT EDLGLSLHSL QDQNLNHRSY TEQMLFSGSN STMNIGFIFN PHSMPVPQQL 240 IFSQNSAFSQ REPLQSNYSH LFHAWNERQM PSVDHHNAQA ISQSSMYNIH FGSDFQVPAR 300 IRGDEEPGVV SLQPSSVSPS SQH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	4e-22	33	86	1	54	Putative transcription factor PCF6
5zkt_B	4e-22	33	86	1	54	Putative transcription factor PCF6
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027063409.1	0.0	transcription factor PCF5-like
Refseq	XP_027063410.1	0.0	transcription factor PCF5-like
Refseq	XP_027127404.1	0.0	transcription factor PCF5-like
Refseq	XP_027127405.1	0.0	transcription factor PCF5-like
TrEMBL	A0A068V545	0.0	A0A068V545_COFCA; Uncharacterized protein
STRING	cassava4.1_031505m	1e-103	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6607	22	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15030.3	3e-52	TCP family protein