PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc05_g09250
Common NameGSCOC_T00002655001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MIKC_MADS
Protein Properties Length: 246aa    MW: 28184.8 Da    PI: 9.474
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc05_g09250genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.31.5e-312978150
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
  Cc05_g09250 29 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 78
                 79***********************************************8 PP
2K-box105.18.6e-35981935100
        K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                  +  s++ea+a+ +qqe++kL+k i+++q+++Rh+lG++++ L++keL++Le ++ek++ +iR++Knell+++ie + k+e elq++n++Lr+k++e
  Cc05_g09250  98 NPGSVSEANAQFYQQEASKLRKHIREIQNSNRHILGDGVDGLNFKELKNLEGKVEKAIGRIRTRKNELLFAEIELMHKREIELQNANTYLRAKIAE 193
                  334499***************************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.3752181IPR002100Transcription factor, MADS-box
SMARTSM004322.9E-412180IPR002100Transcription factor, MADS-box
CDDcd002651.01E-452298No hitNo description
SuperFamilySSF554557.06E-332293IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-332343IPR002100Transcription factor, MADS-box
PROSITE patternPS0035002377IPR002100Transcription factor, MADS-box
PfamPF003199.1E-273077IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-334358IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-335879IPR002100Transcription factor, MADS-box
PfamPF014861.0E-25105191IPR002487Transcription factor, K-box
PROSITE profilePS5129714.663107197IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0090376Biological Processseed trichome differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MDCPSQDHQF DQSSSSQLRK TGRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSVLCD  60
AEVALIVFSS RGRLYEYANN SVRGTIERYK KACADSSNPG SVSEANAQFY QQEASKLRKH  120
IREIQNSNRH ILGDGVDGLN FKELKNLEGK VEKAIGRIRT RKNELLFAEI ELMHKREIEL  180
QNANTYLRAK IAENERAQQH MNLMPGSEYQ PLASQPYDVR NFLPVNLLEP DQHYSRQDQT  240
ALQLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1egw_A3e-202289168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_B3e-202289168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_C3e-202289168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_D3e-202289168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ4832460.0KJ483246.1 Coffea arabica PLE (PLE) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027063684.10.0floral homeotic protein AGAMOUS
RefseqXP_027063685.10.0floral homeotic protein AGAMOUS
SwissprotQ93XH41e-136MADS1_VITVI; Agamous-like MADS-box protein MADS1
TrEMBLA0A068VDX10.0A0A068VDX1_COFCA; Uncharacterized protein
STRINGVIT_12s0142g00360.t011e-133(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58780.11e-115MIKC_MADS family protein
Publications ? help Back to Top
  1. Boss PK,Vivier M,Matsumoto S,Dry IB,Thomas MR
    A cDNA from grapevine (Vitis vinifera L.), which shows homology to AGAMOUS and SHATTERPROOF, is not only expressed in flowers but also throughout berry development.
    Plant Mol. Biol., 2001. 45(5): p. 541-53
    [PMID:11414613]
  2. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  3. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]