PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc05_g09350

Common Name

GSCOC_T00002643001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

Protein Properties

Length: 298aa MW: 34708.1 Da PI: 10.2224

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc05_g09350	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	55.9	7.7e-18	74	157	6	92
..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefel 92 + ++ k+++l++p +fa++++++ +s +l+l+d++ r+W v+l + +++r y++ G eF angLkegD++ F+l+++ ++++ Cc05_g09350 74 IEPHCIKHRILYFPMEFARSNNLSD-RSCDLILRDPKKRVWHVEL--KARGRRvYIFCHGLDEFFTANGLKEGDTCKFELVQN-GKTP 157 5788999************8885.667************..555555599**********************985.3334 PP
2	B3	56.6	4.5e-18	207	291	5	93
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 ++ +++lk+ l+lp kfa+++g+ + ++ +++++de+ r W+v++ + + +++ +++GW F+kangLk+gD + F+ ++ +++++v Cc05_g09350 207 TIMPYNLKKYVLRLPMKFARQNGLTEMKG-DMIIKDEKQRLWKVNF--EHRANGVEISRGWGYFCKANGLKVGDRFKFEIIK-KGKRPV 291 45689999999*********9998887.9***********..88888899*********************987.555555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.0E-20	64	161	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	9.02E-20	65	166	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.30E-17	68	162	No hit	No description
PROSITE profile	PS50863	11.378	69	164	IPR003340	B3 DNA binding domain
SMART	SM01019	1.9E-15	70	164	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.0E-16	73	158	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	5.8E-21	198	294	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	5.1E-21	198	295	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.57E-16	202	296	No hit	No description
PROSITE profile	PS50863	13.479	203	297	IPR003340	B3 DNA binding domain
SMART	SM01019	9.5E-13	203	297	IPR003340	B3 DNA binding domain
Pfam	PF02362	7.7E-17	207	292	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MTLIYQKVFQ ANSSGKGMVF LSVELKKSFI MHEEVNRRWR IYSPTKDGLS TRKSGHKLSS 60 YDKEPGNPQF ISTIEPHCIK HRILYFPMEF ARSNNLSDRS CDLILRDPKK RVWHVELKAR 120 GRRVYIFCHG LDEFFTANGL KEGDTCKFEL VQNGKTPILN FLTDLTKDDQ PQPQPPSFMK 180 TNSKNKAKRL EASSEPENDD HPYFVSTIMP YNLKKYVLRL PMKFARQNGL TEMKGDMIIK 240 DEKQRLWKVN FEHRANGVEI SRGWGYFCKA NGLKVGDRFK FEIIKKGKRP VMNFHCE*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027063114.1	0.0	B3 domain-containing protein REM14-like
TrEMBL	A0A068VDW3	0.0	A0A068VDW3_COFCA; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA322	15	171

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00260.1	1e-28	B3 family protein