PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc05_g09660
Common NameGSCOC_T00021555001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family Nin-like
Protein Properties Length: 309aa    MW: 33088.9 Da    PI: 9.962
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc05_g09660genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK672.9e-213178249
       RWP-RK  2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRki 49
                 +k+++++++sk+Fslp+ dAA +Lgvc++vLK+iC ++G+ RWPhRk 
  Cc05_g09660 31 TKSLTFDQVSKFFSLPLSDAADTLGVCPSVLKKICHENGLVRWPHRKF 78
                 689********************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151914.60717100IPR003035RWP-RK domain
PfamPF020425.2E-193378IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MSALQSRPPN PTLNPYPNPN PNPKAAPLPI TKSLTFDQVS KFFSLPLSDA ADTLGVCPSV  60
LKKICHENGL VRWPHRKFLS GKSIEQIKED AARAKNKQLN EVPKDAGQGS DALANSTVSL  120
LAGTGTELQN KTTSSVAEVS KAQSVMQLQG NKNPQIGSPP KLTGLNLTKG TSTNEDEFKY  180
GFPSHGLSTV SYKWWGNSSN SGSKDTPGTA KDETQGNRKS PVNSANGSTL ASRTDGQKCE  240
NEARESSTDS PGEGVLSSLR KRAATEGHKA LKLGAHRRYV MELDQTKRSV LQQIFKSSLP  300
SEWGDDSL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027063502.10.0protein NLP2
TrEMBLA0A068UEW30.0A0A068UEW3_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA107441921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20640.26e-11Nin-like family protein