PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc05_g09830
Common NameGSCOC_T00021533001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB_related
Protein Properties Length: 154aa    MW: 17547 Da    PI: 10.5558
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc05_g09830genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.86e-0994148247
                      SSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqky 47 
                      ++WT  E+e l+++v+++ ++      W++I +         Rt+ ++k++w++ 
      Cc05_g09830  94 LPWTDAEEEMLKEGVEKFSTDrnkniPWRKILEFGRhvfdGSRTPVDLKDKWRNI 148
                      69******************************998899***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.1E-1186150IPR009057Homeodomain-like
PROSITE profilePS512949.28488153IPR017930Myb domain
SuperFamilySSF466891.79E-1190149IPR009057Homeodomain-like
SMARTSM007172.5E-792151IPR001005SANT/Myb domain
PfamPF002499.7E-795149IPR001005SANT/Myb domain
CDDcd116608.10E-1495149No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MHLQEKRAGQ TSDSICKDSN AASTGKASKQ NDKRKEENAE ATCFRKLSRN SASHHRASLD  60
QFEKIHACGK LRKLNKPAPQ CSMILCPNAR RKSLPWTDAE EEMLKEGVEK FSTDRNKNIP  120
WRKILEFGRH VFDGSRTPVD LKDKWRNILG KVR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027064600.11e-107uncharacterized protein LOC113690760 isoform X3
RefseqXP_027064601.11e-107uncharacterized protein LOC113690760 isoform X3
RefseqXP_027064602.11e-107uncharacterized protein LOC113690760 isoform X3
RefseqXP_027064603.11e-107uncharacterized protein LOC113690760 isoform X3
RefseqXP_027064604.11e-107uncharacterized protein LOC113690760 isoform X3
TrEMBLA0A068UCC51e-109A0A068UCC5_COFCA; Uncharacterized protein
STRINGXP_002510568.13e-28(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8862910
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.29e-07MYB_related family protein