PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc05_g12510

Common Name

GSCOC_T00021183001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

NAC

Protein Properties

Length: 330aa MW: 36506.3 Da PI: 9.3353

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc05_g12510	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	173.5	6.3e-54	15	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+vl++ ++ Cc05_g12510 15 LPPGFRFHPTDEELVVHYLKKKAASAPLPV-SIIAEVDLYKFDPWELPAKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVLTSgGT 111 79**************************.89***********988899***********************************99777 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 ++vg+kk Lvfy g+ pkg kt+W+mheyrl Cc05_g12510 112 QKVGVKKALVFYGGKPPKGIKTNWIMHEYRL 142 88*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.31E-64	7	177	IPR003441	NAC domain
PROSITE profile	PS51005	62.159	15	176	IPR003441	NAC domain
Pfam	PF02365	2.7E-28	16	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009753	Biological Process	response to jasmonic acid
GO:0045995	Biological Process	regulation of embryonic development
GO:0048317	Biological Process	seed morphogenesis
GO:0080060	Biological Process	integument development
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MESTDSSTGS QQPQLPPGFR FHPTDEELVV HYLKKKAASA PLPVSIIAEV DLYKFDPWEL 60 PAKATFGEQE WYFFSPRDRK YPNGARPNRA ATSGYWKATG TDKPVLTSGG TQKVGVKKAL 120 VFYGGKPPKG IKTNWIMHEY RLVDNKTSIK PPGCDIGNKK GSLRLDDWVL CRIYKKNNTP 180 RPMDHDRDDF NDMMPSIPPS LPPSMSMSSQ QKILGLKASN FGALLENEQS AFEVPGMLTS 240 NHVIPAKRAL PALYWNDEGN PISPSNKRFL ADSGDGNIGR TNNDENSSIA TLLSQLPQTT 300 SLHQQAMLGS LGDGVFRQPY QVTGMNWYS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-75	1	179	6	168	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-75	1	179	6	168	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-75	1	179	6	168	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-75	1	179	6	168	NO APICAL MERISTEM PROTEIN
3swm_A	1e-75	1	179	9	171	NAC domain-containing protein 19
3swm_B	1e-75	1	179	9	171	NAC domain-containing protein 19
3swm_C	1e-75	1	179	9	171	NAC domain-containing protein 19
3swm_D	1e-75	1	179	9	171	NAC domain-containing protein 19
3swp_A	1e-75	1	179	9	171	NAC domain-containing protein 19
3swp_B	1e-75	1	179	9	171	NAC domain-containing protein 19
3swp_C	1e-75	1	179	9	171	NAC domain-containing protein 19
3swp_D	1e-75	1	179	9	171	NAC domain-containing protein 19
4dul_A	1e-75	1	179	6	168	NAC domain-containing protein 19
4dul_B	1e-75	1	179	6	168	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000305}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00361	DAP	Transfer from AT3G15510	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By Jasmonic acid (JA). {ECO:0000269\|PubMed:16805732}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027063640.1	0.0	NAC transcription factor 56-like
Swissprot	Q9LD44	1e-119	NAC56_ARATH; NAC transcription factor 56
TrEMBL	A0A068UE09	0.0	A0A068UE09_COFCA; Uncharacterized protein
STRING	cassava4.1_022751m	1e-179	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1814	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15510.1	1e-110	NAC domain containing protein 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]