PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc05_g12680
Common NameGSCOC_T00021159001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family B3
Protein Properties Length: 259aa    MW: 29337.5 Da    PI: 6.2641
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc05_g12680genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.51e-17154255199
                  EEEE-..-H.HHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
           B3   1 ffkvltpsd.vlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                  f+k l+  d  lk++rl++pkk+ae++  ++++++++ l+++d++g  W+++++y  +++s++y+l+ G ++F  +++ ++gD+v+F++++  +++lv
  Cc05_g12680 154 FEKLLSATDaDLKLARLIIPKKCAEAFfpDISEPRGFLLKIQDTEGMDWDFNYRYwiNGGSKMYILE-GLRDFMISKRWQAGDTVTFYRVE-PGGKLV 249
                  55666544415677***************99999*********************544445556666.********************776.99999* PP

                  EEEE-S CS
           B3  94 vkvfrk 99 
                  ++++++
  Cc05_g12680 250 IGLRKT 255
                  999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.02E-19151255IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-24151255IPR015300DNA-binding pseudobarrel domain
CDDcd100171.76E-19152254No hitNo description
SMARTSM010191.5E-17154256IPR003340B3 DNA binding domain
PROSITE profilePS5086310.306155256IPR003340B3 DNA binding domain
PfamPF023622.2E-14161254IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MGSTSTSSSS KISCFQCEET SSSFDHFRNG WRLRSGEFAQ LCPRCASIYE EGKFCEAFHS  60
NDDGWRDCES CGKLVHCGCI VSFNAYLLLD FGGVICMECS RINFALARSR CLFLEGQPDI  120
TRQTVIEPQY RPRSSEVEVQ QISRNFDCVV TPLFEKLLSA TDADLKLARL IIPKKCAEAF  180
FPDISEPRGF LLKIQDTEGM DWDFNYRYWI NGGSKMYILE GLRDFMISKR WQAGDTVTFY  240
RVEPGGKLVI GLRKTSSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A2e-431322572126B3 domain-containing transcription repressor VAL1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027061772.10.0B3 domain-containing protein Os07g0563300-like isoform X1
SwissprotQ6Z3U31e-40Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A068UBK40.0A0A068UBK4_COFCA; Uncharacterized protein
STRINGMigut.H01903.1.p1e-119(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1299499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.11e-42high-level expression of sugar-inducible gene 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]