PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc05_g14220
Common NameGSCOC_T00038848001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family ERF
Protein Properties Length: 242aa    MW: 26222 Da    PI: 8.2468
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc05_g14220genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.49.9e-203381355
          AP2  3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 ++GVr ++ +gr++AeIrd ++    ++r++lg+f++ae+Aa+a++aa++ l+g
  Cc05_g14220 33 FRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFDSAEDAARAYDAAARTLRG 81
                 8*******.**********883....5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.7E-373295IPR001471AP2/ERF domain
PfamPF008471.2E-123281IPR001471AP2/ERF domain
CDDcd000186.62E-183289No hitNo description
PROSITE profilePS5103223.2353289IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-313389IPR001471AP2/ERF domain
SuperFamilySSF541715.43E-223390IPR016177DNA-binding domain
PRINTSPR003673.1E-103344IPR001471AP2/ERF domain
PRINTSPR003673.1E-105571IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MPRGRAAAVA KQAAAAAAAG ETNGSGGSKE IRFRGVRKRP WGRFAAEIRD PWKKTRVWLG  60
TFDSAEDAAR AYDAAARTLR GPKAKTNFPL PSTSSYHHPH QFSNYQNPNN PNFNNNDPAM  120
FIDHPQNRLY HQEPHQILHP QRPTSSSLSS TVESFSGPRP QTTAAAATSM IPSSSRRHPR  180
SPPVVPDDCH SDCDSSSSVI DDGDCDIASS SFRKPPLPFD LNLPAPVDVD ADDLHCTALC  240
L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-203395669ATERF1
3gcc_A2e-203395669ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00194DAPTransfer from AT1G50640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2787340.0KF278734.1 Coffea arabica ethylene response factor 9 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027064307.11e-178ethylene-responsive transcription factor 3-like
SwissprotQ9SXS85e-65ERF3_TOBAC; Ethylene-responsive transcription factor 3
TrEMBLA0A068UZX41e-177A0A068UZX4_COFCA; Uncharacterized protein
STRINGXP_009770784.11e-83(Nicotiana sylvestris)
STRINGPGSC0003DMT4000574433e-83(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33302347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.15e-32ethylene responsive element binding factor 3