PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc05_g15960
Common NameGSCOC_T00038621001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family NAC
Protein Properties Length: 311aa    MW: 35227 Da    PI: 8.1853
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc05_g15960genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.28.1e-5061321129
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                  lppGfrFhP+deel+++yL k+v+  + +    + evd++k+ePwd+p +++  + ke+yf+s+rd+kyatg r+nrat sgyWkatgkd++vl+ kg
  Cc05_g15960   6 LPPGFRFHPRDEELICDYLMKRVACCDQPP--LMIEVDLNKCEPWDIPaENACVGGKEYYFYSQRDRKYATGLRTNRATLSGYWKATGKDRPVLR-KG 100
                  79*********************9988666..6899************555666899*************************************9.99 PP

          NAM  98 elvglkktLvfykgrapkgektdWvmheyrle 129
                  +lvg++ktLvfy+grapkg+ktdWvmhe+rle
  Cc05_g15960 101 TLVGMRKTLVFYQGRAPKGRKTDWVMHEFRLE 132
                  9****************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.36E-573156IPR003441NAC domain
PROSITE profilePS5100554.3816155IPR003441NAC domain
PfamPF023656.1E-257131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MVEAKLPPGF RFHPRDEELI CDYLMKRVAC CDQPPLMIEV DLNKCEPWDI PAENACVGGK  60
EYYFYSQRDR KYATGLRTNR ATLSGYWKAT GKDRPVLRKG TLVGMRKTLV FYQGRAPKGR  120
KTDWVMHEFR LEGPFGPPKL SSLKEDWVLC RVFFKNRDNN IIAAKQGMDM NSYDGETSPS  180
PLPPLMDPYF KFGQTQTNTN EHEQVPCFSI FSPDQANNNS QPFSYLAHMD VPSFSTKNMP  240
TFNFGGIPDF GAYFSSSCRE QKVIKAVLNQ LTRMENASPN VKGSPSFGEA STSDSFLSEV  300
ALSTMWNNQY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-48215611169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027062380.10.0NAC domain-containing protein 21/22-like isoform X2
SwissprotQ84TE61e-107NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A068UYJ90.0A0A068UYJ9_COFCA; Uncharacterized protein
STRINGGLYMA15G40510.11e-133(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13424297
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.21e-110NAC domain containing protein 1
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]