PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc05_g16210

Common Name

GSCOC_T00038591001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

LBD

Protein Properties

Length: 117aa MW: 12878 Da PI: 5.7372

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc05_g16210	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	24.3	8.4e-08	1	32	69	100
DUF260 69 ardPvyGavgvilklqqqleqlkaelallkee 100 +rdPvyG+v+ i++lq+q++ l+++lal++++ Cc05_g16210 1 MRDPVYGCVSAISSLQNQVDLLQSQLALAQAQ 32 69**************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	2.7E-5	2	30	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 117 aa Download sequence Send to blast
MRDPVYGCVS AISSLQNQVD LLQSQLALAQ AQVLQMRISS TQSSSSLISM SQDQYYNSTT 60 VPTDHNSAPP DHHHQNHSPT ASRDHRHLEP TSSHFNTDTP PMMLDEGNIG DSLWSY*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027062426.1	4e-80	LOB domain-containing protein 4-like
TrEMBL	A0A068UYH6	1e-78	A0A068UYH6_COFCA; Uncharacterized protein