PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g00780
Common NameGSCOC_T00023278001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family ERF
Protein Properties Length: 536aa    MW: 58704.9 Da    PI: 4.5295
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g00780genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.31.4e-1686144255
          AP2   2 gykGVrwdkkrgrWvAeIrdpse.ng.....krkrfslgkfgtaeeAakaaiaarkkleg 55 
                   ++GVr++  +g+WvAeIr+p++  +     kr r +lg+f ta eAa  +++a+++++g
  Cc06_g00780  86 NFRGVRQRT-WGKWVAEIREPVSfSKtqvlsKRGRLWLGTFPTAVEAALKYDEAARAMYG 144
                  69****999.**********8887667898777************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.4E-1085144IPR001471AP2/ERF domain
CDDcd000181.37E-2785154No hitNo description
PROSITE profilePS5103221.7286152IPR001471AP2/ERF domain
SMARTSM003808.5E-3186158IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-1786153IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.8E-2786153IPR001471AP2/ERF domain
PRINTSPR003679.2E-88798IPR001471AP2/ERF domain
PRINTSPR003679.2E-8118134IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MACGGNRNNN NSRRRRTSVE SESVDDILLK WKNLNRQILE TVGVVGDDEV GGDELFRRKK  60
KRKVLPRGSR KGCMRGKGGP ENSRCNFRGV RQRTWGKWVA EIREPVSFSK TQVLSKRGRL  120
WLGTFPTAVE AALKYDEAAR AMYGPDAILN FPENCAPPTP PPSSLHHHSS TISDNNDSST  180
PDSAASSTSV DPVLVPPDGS CIAKGVLEIE IDNHADKSNG YLVRTRTVES PAETSGLSGV  240
TVVQESKIES DATHYAPTPS PTKLRCCKMD GGEPSYSRIK VEQPPENQVH SQVVSQINED  300
SVIRHAAEAE TRFPIDDPVG AADLDELVLL DEQQKLGNPG MPDDNGFWRN ILHGQSLDID  360
SSECISSLDD DMRLATGDWA ANLDDNLPVG CAASGAISLQ EDSTWLENIN KMLMEDTDSL  420
NFLDLLDPKP QGGYRDETFR VRGRGCQEPG TGRFELQNIQ PPATMADDFP GSSGAVNASD  480
TGLRNEVDGD LGQYRSSDED QGQYWLQHQD AKLNVENLQA IILDDNLNVD VLDLY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-1586152260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15661RRKKKR
25662RRKKKRK
35863KKKRKV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A068UDR80.0A0A068UDR8_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA79651530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.13e-34ERF family protein