PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc06_g00820

Common Name

GSCOC_T00023282001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

BES1

Protein Properties

Length: 185aa MW: 20617.4 Da PI: 9.5984

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc06_g00820	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	122.4	5.9e-38	37	110	3	76
DUF822 3 sgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl 76 + r p+ +Er nnk+RER RR +a ki+aGLRa+Gny+lpk aD n+ lkALc+eAGw vedDGt+yrk s + Cc06_g00820 37 KYRYPSDRERLNNKQRERNRRGVAHKIFAGLRAHGNYQLPKNADSNDLLKALCEEAGWHVEDDGTVYRKTSMVE 110 6799****************************************************************987655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	1.7E-34	38	118	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MAEVTKNAGL TPRGCIKSSK GPWVVRRTTR NGGTVTKYRY PSDRERLNNK QRERNRRGVA 60 HKIFAGLRAH GNYQLPKNAD SNDLLKALCE EAGWHVEDDG TVYRKTSMVE EPSLIKMDSY 120 AVGMPHKLEA AGYCTCKEAI ASSFAGECRQ RNLVPFGIYE GIHTDLALSL SLPLAHDHQF 180 KDRV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zd4_A	4e-14	59	105	392	438	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B	4e-14	59	105	392	438	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C	4e-14	59	105	392	438	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D	4e-14	59	105	392	438	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009795965.1	3e-56	PREDICTED: uncharacterized protein LOC104242587
TrEMBL	A0A068UD63	1e-136	A0A068UD63_COFCA; Uncharacterized protein
STRING	XP_009795965.1	1e-55	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6204	21	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36780.1	3e-18	BES1/BZR1 homolog 2