PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc06_g03510

Common Name

GSCOC_T00023635001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

NF-YB

Protein Properties

Length: 176aa MW: 18699.8 Da PI: 7.3445

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc06_g03510	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	181.5	7e-57	29	123	1	95
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 vreqdrflPian+srimkk+lPan+ki+kdaketvqecvsefisf+tseasdkcqrekrktingddllwa+atlGfedy++plkvyl++yre ++ Cc06_g03510 29 VREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKVYLTRYREGDT 123 69*****************************************************************************************9665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	3.4E-53	24	128	IPR009072	Histone-fold
SuperFamily	SSF47113	2.02E-39	32	147	IPR009072	Histone-fold
Pfam	PF00808	2.1E-28	35	99	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	1.2E-20	63	81	No hit	No description
PROSITE pattern	PS00685	0	66	82	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	1.2E-20	82	100	No hit	No description
PRINTS	PR00615	1.2E-20	101	119	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MADSSQGGTP ASPGGGSHES GDQSPRSGVR EQDRFLPIAN ISRIMKKALP ANGKIAKDAK 60 ETVQECVSEF ISFITSEASD KCQREKRKTI NGDDLLWAMA TLGFEDYIDP LKVYLTRYRE 120 GDTKGSAKGA DGSAKRDGVQ LGPSPQLAHQ GSFSQGMNYG SSQVSLSLSL SFTCT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	8e-48	29	120	1	92	Transcription factor HapC (Eurofung)
4g92_B	8e-48	29	120	1	92	Transcription factor HapC (Eurofung)
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027065745.1	1e-116	nuclear transcription factor Y subunit B-10-like isoform X3
Refseq	XP_027069782.1	1e-116	nuclear transcription factor Y subunit B-1-like isoform X3
Refseq	XP_027173512.1	1e-116	nuclear transcription factor Y subunit B-1-like isoform X3
Swissprot	Q8VYK4	5e-79	NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBL	A0A068UDV1	1e-126	A0A068UDV1_COFCA; Uncharacterized protein
STRING	XP_009620316.1	2e-98	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA111	24	356

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37060.3	1e-80	nuclear factor Y, subunit B8

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]