PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g03710
Common NameGSCOC_T00023660001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family S1Fa-like
Protein Properties Length: 89aa    MW: 9878.64 Da    PI: 10.2853
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g03710genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA132.11.4e-412288470
         S1FA  4 akveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                 +++eakG+nPGlivll+vggl+l flvgny ly+yaqk+lPP+kkkPvskkk+kre+lkqGv++PGe
  Cc06_g03710 22 VETEAKGFNPGLIVLLLVGGLILAFLVGNYFLYMYAQKTLPPKKKKPVSKKKMKRERLKQGVSAPGE 88
                 689***************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0190130.0022388No hitNo description
PfamPF046892.8E-402488IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MDYEQDFGDR VPPSFDSRNM GVETEAKGFN PGLIVLLLVG GLILAFLVGN YFLYMYAQKT  60
LPPKKKKPVS KKKMKRERLK QGVSAPGE*
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2329359e-56AC232935.1 Solanum lycopersicum chromosome 9 clone C09HBa0067J16, complete sequence.
GenBankHG9755219e-56HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027072975.12e-57DNA-binding protein S1FA-like
RefseqXP_027175428.12e-57DNA-binding protein S1FA-like
SwissprotP425532e-16S1FA1_ORYSJ; DNA-binding protein S1FA1
TrEMBLA0A068UDW61e-56A0A068UDW6_COFCA; Uncharacterized protein
STRINGLus100150731e-27(Linum usitatissimum)
STRINGLus100231771e-27(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31742249