PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g03790
Common NameGSCOC_T00023675001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family NAC
Protein Properties Length: 361aa    MW: 40619 Da    PI: 8.7963
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g03790genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1661.3e-51121391128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 
                  lppGfrFhP+deel+v+yL+kk+++ +l++  +i++v++yk++PwdLpkk+  +e+ewyfF++rd+ky++g r+nr+++sgyWkatg+dk++ls+ + 
  Cc06_g03790  12 LPPGFRFHPSDEELIVHYLRKKATKIPLPA-AIIADVELYKFNPWDLPKKALFGEDEWYFFTPRDRKYPNGMRPNRMASSGYWKATGTDKPILSSsGA 108
                  79***************************9.88***************88888999*************************************99677 PP

          NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                  +++g kk Lvfy+gr pkg+ktdW+mheyrl
  Cc06_g03790 109 KVIGAKKALVFYTGRPPKGNKTDWIMHEYRL 139
                  78***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.71E-628165IPR003441NAC domain
PROSITE profilePS5100560.07112165IPR003441NAC domain
PfamPF023651.1E-2613139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MEKDPLNQEI QLPPGFRFHP SDEELIVHYL RKKATKIPLP AAIIADVELY KFNPWDLPKK  60
ALFGEDEWYF FTPRDRKYPN GMRPNRMASS GYWKATGTDK PILSSSGAKV IGAKKALVFY  120
TGRPPKGNKT DWIMHEYRLP EATWTAKKER SMRLDDWVLC RVRQKTGTAG NLWEDRNDPA  180
SKETAQCHLK LDKHCPVPMG TRSTAPATAE MVREYLYRDC PMVPFLFGSQ EFACMDTVSN  240
IIRNKTSSVC GDNFNIDHLQ NAVLPSSSSS GNGLLHMRKR KNILTIEGNG GEGDISFTHP  300
HKKQTHRSEG QMEGNQPQST SNDTTGTVSC STNQMEKNNS SADQLGSIMM YQDLYSLAFA  360
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-7021698169NO APICAL MERISTEM PROTEIN
1ut4_B2e-7021698169NO APICAL MERISTEM PROTEIN
1ut7_A2e-7021698169NO APICAL MERISTEM PROTEIN
1ut7_B2e-7021698169NO APICAL MERISTEM PROTEIN
3swm_A3e-70216911172NAC domain-containing protein 19
3swm_B3e-70216911172NAC domain-containing protein 19
3swm_C3e-70216911172NAC domain-containing protein 19
3swm_D3e-70216911172NAC domain-containing protein 19
3swp_A3e-70216911172NAC domain-containing protein 19
3swp_B3e-70216911172NAC domain-containing protein 19
3swp_C3e-70216911172NAC domain-containing protein 19
3swp_D3e-70216911172NAC domain-containing protein 19
4dul_A2e-7021698169NAC domain-containing protein 19
4dul_B2e-7021698169NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027070370.10.0NAC transcription factor 56-like
TrEMBLA0A068UGJ20.0A0A068UGJ2_COFCA; Uncharacterized protein
STRINGVIT_08s0040g02110.t011e-119(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA133901117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.17e-79NAC domain containing protein 25