PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g06710
Common NameGSCOC_T00031349001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family NF-YA
Protein Properties Length: 310aa    MW: 33714.8 Da    PI: 10.3908
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g06710genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA94.31.5e-29163217358
    CBFB_NFYA   3 plYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                  p++VN KQy++Il+RRq Rak+e ++k+  k+rkpylh SRh hA+rRpRg+gGrF
  Cc06_g06710 163 PIFVNVKQYNGILRRRQYRAKAELQNKV-LKNRKPYLHLSRHLHAMRRPRGCGGRF 217
                  9***************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.1E-33159220IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115234.167160220IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006168.7E-21163185IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.3E-26163217IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006168.7E-21194217IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MAMHGGLFAK EANTTSAFSA VPWWSTGLGS QPAGFHNDLF GQFKPASSAV DKPSNTGTQL  60
TPSREPERNG GQETGNGKTN KFTIFSGECK DPPNGQKFRL QNASNMQAAA AEYRGHLELG  120
FSQPLICAKY PYGEQCHSVF STYGPQLTGR IMLPLNSTSD EVPIFVNVKQ YNGILRRRQY  180
RAKAELQNKV LKNRKPYLHL SRHLHAMRRP RGCGGRFLNT KNLNGSKSNT DDNTTAKGRF  240
SRPTGSQSSD VLQSDSGNSS SPRKANGCRS NNLGTEVTSS LPNMMTSGHW IVPPGKWVVA  300
ADSCCNLKV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-15161221262NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027065718.10.0nuclear transcription factor Y subunit A-2-like
TrEMBLA0A068UPW60.0A0A068UPW6_COFCA; Uncharacterized protein
STRINGVIT_08s0032g01190.t011e-100(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37062347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05690.11e-48nuclear factor Y, subunit A2