PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc06_g08310

Common Name

GSCOC_T00031148001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

YABBY

Protein Properties

Length: 195aa MW: 21772.7 Da PI: 8.5813

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc06_g08310	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	209.6	1.1e-64	11	167	6	170
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsse..kl 101 +eq+Cy+ CnfCn +lavsvP +slf vvtvrCGhCt+l svn+a a q l+++s + ++++++ + ++++ ++ + + ++++ ++ Cc06_g08310 11 PPEQLCYIPCNFCNIVLAVSVPCSSLFDVVTVRCGHCTNLWSVNMAAAFQSLSSSSCWQ-----DVQAQNSTPPDQYRIDFGSSAKGYNIKPATrpSI 103 689***********************************************9999633.....3333333334444444333333333333320023 PP YABBY 102 senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++ +e v+rPPekrqrvPsayn+fikeeiqrika+nPdi hreafs+aaknWahfP+ihfgl Cc06_g08310 104 PNRAEER-----IVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDINHREAFSTAAKNWAHFPHIHFGL 167 3333333.....379**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.2E-70	11	167	IPR006780	YABBY protein
SuperFamily	SSF47095	5.5E-8	106	160	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	4.0E-4	121	159	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MSSCSDVSPP PPEQLCYIPC NFCNIVLAVS VPCSSLFDVV TVRCGHCTNL WSVNMAAAFQ 60 SLSSSSCWQD VQAQNSTPPD QYRIDFGSSA KGYNIKPATR PSIPNRAEER IVNRPPEKRQ 120 RVPSAYNQFI KEEIQRIKAN NPDINHREAF STAAKNWAHF PHIHFGLMLE TNNKPKLGED 180 SEKRLTPRTA LLNK*

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027066017.1	1e-144	axial regulator YABBY 5-like
Refseq	XP_027175450.1	1e-144	axial regulator YABBY 5
Swissprot	Q8GW46	1e-81	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A068UPF7	1e-143	A0A068UPF7_COFCA; Uncharacterized protein
STRING	VIT_11s0016g05590.t01	1e-104	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA381	24	163

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	4e-84	YABBY family protein

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]