PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g08760
Common NameGSCOC_T00031089001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family C3H
Protein Properties Length: 518aa    MW: 58909.2 Da    PI: 7.0887
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g08760genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.3e-0789111427
                  ---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                  ++C +++  G+C+ G+rC+F+Hgp
  Cc06_g08760  89 VPCYYYYN-GFCSKGERCSFMHGP 111
                  68******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.606635IPR000571Zinc finger, CCCH-type
SMARTSM003560.049634IPR000571Zinc finger, CCCH-type
PfamPF156631.5E-11664No hitNo description
PROSITE profilePS5010310.2213763IPR000571Zinc finger, CCCH-type
SMARTSM003560.633962IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-685110IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.72785112IPR000571Zinc finger, CCCH-type
SMARTSM003566.9E-486111IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-490111IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-690113IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MEQVLQKKNT DCVYFLASPL TCKKGIECEY RHSEIARLNP RDCWYWLAGS CVNPTCAFRH  60
PPLDGRTETA SESASADHQS AITVNKTNVP CYYYYNGFCS KGERCSFMHG PEENTYTWRS  120
SKQSSAIADG PPLEEKISTG TGRGPVPAET HSARTEPKSL AGTKVIPQRE SRQFTPNNAA  180
EHCQPAPNDA AEKSVYPQIS VSSSEEAATI RSNFQIHTEG LVHRRSLEST DQGFDDEFDN  240
HNRQEVDNHI EREEWLESSP GFDVLVNDRS EDLGYEDEAL YLPHRDMEDR ECNGQHLAYE  300
YEDNIEYDPA YPDIRTSFEQ GIPNWYHHVE EDVCNVYQKT PFYARERVLD HPLPRKRKLL  360
QTELAGMDLR DYLKKRRMPE SEDTKYFSGR PHFSHLTGKI TEKASTGGRG HLHGRLASKV  420
EFADKSRIET ENCSSSTYQH GRTRRPSINR SRLHTKERKQ GKRQIVSGVP RKAVPRKRKS  480
ARESTVFTGP KTLAQIKEEK EKALCGRTGE GHFSGDA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1353358PRKRKL
2355376KRKLLQTELAGMDLRDYLKKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027065247.10.0zinc finger CCCH domain-containing protein 32-like
TrEMBLA0A068UPB70.0A0A068UPB7_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11433911