PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g10730
Common NameGSCOC_T00041741001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family NAC
Protein Properties Length: 469aa    MW: 52212.9 Da    PI: 6.8131
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g10730genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM116.33e-36511931128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk........sgy 82 
                  lp+G++F+Ptd+el+ e+L++kvegk+      ++++  +i+   +i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r+++        + +
  Cc06_g10730  51 LPAGVKFDPTDQELI-EHLEAKVEGKEskshplIDEFIpTIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKIQtecdlqggETR 146
                  799************.99*********6665443333333666646**********.555666799******************73334555544778 PP

          NAM  83 WkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                  W++tgk+++v++ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Cc06_g10730 147 WHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 193
                  ************.999***********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-3847212IPR003441NAC domain
PROSITE profilePS5100532.84851212IPR003441NAC domain
PfamPF023651.9E-1652193IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MNKSLQSHQL GSGISSSDLI DAKLEEHQLC GSKHCPGCGH KLDGKPDWVG LPAGVKFDPT  60
DQELIEHLEA KVEGKESKSH PLIDEFIPTI EGEDGICYTH PEKLPGVTRD GLSRHFFHRP  120
SKAYTTGTRK RRKIQTECDL QGGETRWHKT GKTRPVMVNG KQKGCKKILV LYTNFGKNRK  180
PEKTNWVMHQ YHLGQHEEEK EGELVVSKIF YQTQPRQCNW TERATTNAGE GTNDSITRRD  240
SGGGSGSCSS REIMTSHGDE LSAAAVGAAI SSYGALDIQQ LKADQFSFLP YRKSFDEGGI  300
GEPSIVREGP GVAAAAAAAV GTCEERDFPE HQRQHHVTHE LHHQHHHQQQ IATTAFHITR  360
PSHSISTIIS PPPLHHTSVI LDDDSFHHVS RLMLPTDNFQ QHQQQQQQPQ QQQHHKLGGR  420
SASGLEELIM GCTSTDIKEE SSITNPQETE WLKYSSFWPD PDNPDHHG*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00460DAPTransfer from AT4G29230Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027066061.10.0NAC domain-containing protein 75-like
RefseqXP_027066062.10.0NAC domain-containing protein 75-like
RefseqXP_027066063.10.0NAC domain-containing protein 75-like
SwissprotQ9M0F80.0NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A068U3X80.0A0A068U3X8_COFCA; Uncharacterized protein
STRINGVIT_11s0016g02880.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40572444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-166NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]