PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g10860
Common NameGSCOC_T00041725001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB
Protein Properties Length: 262aa    MW: 29075.6 Da    PI: 6.9931
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g10860genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.49.4e-151458144
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrw 44
                     rg+W++eEd +l ++++++G+g +W + +r+ g++R++k+c++rw
      Cc06_g10860 14 RGPWSPEEDAILRNYIEKYGTGgNWIALPRKAGLKRCGKSCRLRW 58
                     89******************************************* PP
2Myb_DNA-binding28.82.8e-0957792346
                     -HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqk 46
                     +W+ Ia++++ gRt++++k++w++
      Cc06_g10860 57 RWSVIASHLP-GRTDNDVKNHWNT 79
                     4*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.4E-17557IPR009057Homeodomain-like
PROSITE profilePS5129419.209985IPR017930Myb domain
SMARTSM007171.3E-161383IPR001005SANT/Myb domain
SuperFamilySSF466893.34E-171482IPR009057Homeodomain-like
PfamPF002498.4E-131458IPR001005SANT/Myb domain
CDDcd001676.03E-141681No hitNo description
Gene3DG3DSA:1.10.10.606.9E-125887IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MGRAPCCDKT KVKRGPWSPE EDAILRNYIE KYGTGGNWIA LPRKAGLKRC GKSCRLRWSV  60
IASHLPGRTD NDVKNHWNTK LKKKLSAAGA KRAPDCYGNS TYPIVGSDAP VQYSSMDHMV  120
PGYSMTEVVP DLLYDSSSTD QFSLPELFEV QKNSTLQKNG FTTSSSQEIS SLSPSCSLAK  180
SYSSWNDNLF GEEVGFFMEL ESRSSNYNLV QSAQQEEKVR NEVEGSCLPI YSYPTASFFD  240
QMSDNILPPQ GHHQTAFPIL D*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027067301.11e-176transcription factor RAX1-like
TrEMBLA0A068U4L90.0A0A068U4L9_COFCA; Uncharacterized protein
STRINGPGSC0003DMT4000009327e-54(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1559057
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23000.15e-42myb domain protein 37