PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g11670
Common NameGSCOC_T00041630001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB_related
Protein Properties Length: 281aa    MW: 30902.9 Da    PI: 8.9764
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g11670genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.31.5e-12556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT eE+e l  +vk++G+g Wk I r          R+  ++k++w+++
      Cc06_g11670  5 KQKWTSEEEEALRAGVKKHGTGKWKNIQRDPEfshllFSRSNIDLKDKWRNL 56
                     79*********************************9989***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.034161IPR017930Myb domain
SMARTSM007171.6E-8459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-14456IPR009057Homeodomain-like
PfamPF002495.8E-9556IPR001005SANT/Myb domain
SuperFamilySSF466891.72E-14660IPR009057Homeodomain-like
CDDcd116602.30E-21657No hitNo description
SMARTSM005262.3E-17118183IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467853.54E-15118200IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150424.595120188IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.107.3E-14121188IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005381.1E-9123182IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MGNPKQKWTS EEEEALRAGV KKHGTGKWKN IQRDPEFSHL LFSRSNIDLK DKWRNLTVSA  60
SNGLGPREKS KAQKGKAISD APATPLPITQ VPASSTPLSL EVPADVAADD SSKCLLDGKT  120
ASKYNGMIHE ALSTLKEPNG SDTSTIVNFI EQRHEVPPNF RRLISARLRR LVAQEKLEKV  180
QNSYRIKKDL LEGSKTPVPK PRDVQPRQAQ SIGHLADTVE EATVSAAYTI AEAENKSFVV  240
AEAVKESERV SRMSEDAESM LQLAHEIFDR SSHGEMVLVA *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027068833.10.0telomere repeat-binding factor 4-like
TrEMBLA0A068U3Q40.0A0A068U3Q4_COFCA; Uncharacterized protein
STRINGXP_009757029.11e-129(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25042355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.21e-73MYB_related family protein