PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc06_g12880

Common Name

GSCOC_T00041480001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

HD-ZIP

Protein Properties

Length: 180aa MW: 20029.8 Da PI: 10.0073

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc06_g12880	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.2	3.3e-19	55	108	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ +++keq +Le+ F+ +++p+++ + eLA++lgL rqV +WFqNrRa+ k Cc06_g12880 55 KKSRLSKEQAAVLEANFNDHPNPDTALKNELADRLGLFPRQVDIWFQNRRARTK 108 56789***********************************************98 PP
2	HD-ZIP_I/II	90.3	2.3e-29	55	141	2	88
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 kk rlskeq+++LE +F+ + + ++ K+ela +Lgl prqv++WFqnrRARtk+k+ +++e+Lk+ +++l een +L++e e+ + Cc06_g12880 55 KKSRLSKEQAAVLEANFNDHPNPDTALKNELADRLGLFPRQVDIWFQNRRARTKSKKNVSECERLKQVCKNLIEENLKLSEEIEKQK 141 9*******************************************************************************9998755 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	17.346	50	110	IPR001356	Homeobox domain
SMART	SM00389	2.6E-16	52	114	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.76E-16	52	109	IPR009057	Homeodomain-like
CDD	cd00086	7.70E-16	55	111	No hit	No description
Pfam	PF00046	1.5E-16	55	108	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	5.8E-18	57	112	IPR009057	Homeodomain-like
PRINTS	PR00031	5.6E-5	81	90	IPR000047	Helix-turn-helix motif
PRINTS	PR00031	5.6E-5	90	106	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MEARENSNTQ LPLALGPRKN TKRGPRKNTK RVLSLELSLG AQQVQGRGSS DENAKKSRLS 60 KEQAAVLEAN FNDHPNPDTA LKNELADRLG LFPRQVDIWF QNRRARTKSK KNVSECERLK 120 QVCKNLIEEN LKLSEEIEKQ KALATGDQKG AFYAYGLSGY VLVCPVCHQQ YLIGSCGAM*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027070041.1	1e-127	homeobox-leucine zipper protein HAT14-like
TrEMBL	A0A068U375	1e-129	A0A068U375_COFCA; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1118	24	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	1e-27	homeobox from Arabidopsis thaliana