PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g13380
Common NameGSCOC_T00041407001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family C2H2
Protein Properties Length: 164aa    MW: 18400.2 Da    PI: 9.0735
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g13380genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.000154466123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C++C + F ++  L  H++ H
  Cc06_g13380 44 FSCNYCRRKFYSSQALGGHQNAH 66
                 89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.96E-64171No hitNo description
PROSITE profilePS5015711.0534471IPR007087Zinc finger, C2H2
PROSITE patternPS0002804666IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MNYEPSTALN LGLTNNDLNL DLILDRSTSS LSSSPLNPSE PRVFSCNYCR RKFYSSQALG  60
GHQNAHKLER TLAKKSRELS SAVRPHSGSS SRSGSVSSAP NHVQPPIMGH DHHGHRRFTS  120
DTSYGRREMD YDSRIESHHW SSRVYKPESV QEDYSQIDLS LRL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010656831.12e-55PREDICTED: zinc finger protein 2
TrEMBLA0A068U3251e-115A0A068U325_COFCA; Uncharacterized protein
STRINGVIT_11s0052g01120.t017e-55(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA88762128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.12e-22zinc finger protein 2