PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g15740
Common NameGSCOC_T00030780001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family HD-ZIP
Protein Properties Length: 351aa    MW: 38419 Da    PI: 9.2955
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g15740genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.16.1e-18184238256
                  T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  rk+ ++tkeq   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  Cc06_g15740 184 RKKLRLTKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 238
                  788899***********************************************98 PP
2HD-ZIP_I/II127.94.1e-41184274192
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  +kk+rl+keq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk
  Cc06_g15740 184 RKKLRLTKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELR-ALK 274
                  69*************************************************************************************9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046183.1E-659140IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.609.4E-18170234IPR009057Homeodomain-like
SuperFamilySSF466891.2E-18175241IPR009057Homeodomain-like
PROSITE profilePS5007117.022180240IPR001356Homeobox domain
SMARTSM003898.3E-16182244IPR001356Homeobox domain
PfamPF000461.8E-15184238IPR001356Homeobox domain
CDDcd000866.61E-16184241No hitNo description
PROSITE patternPS000270215238IPR017970Homeobox, conserved site
SMARTSM003407.8E-26240283IPR003106Leucine zipper, homeobox-associated
PfamPF021837.6E-11240274IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MELALSLGDT PKPFAFLDKA QKVVNRDLGF CMGLGKGAAD RGGDHQSRNS RESDGERRGS  60
SDPPVQLDLL PFSPVPRSQT SSSQLSFSWL TQHLTVAAEP GSSNGFTRAV DVNRRSLGVD  120
KGGEEGTTAL SSPNSAASSF QMDFSIYRSG SRSNKRSENE AENDIRGGMA SSRASDEDEN  180
GMARKKLRLT KEQSAFLEES FKEHNTLNPK QKLALAKQLN LRPRQVEVWF QNRRARTKLK  240
QTEVDCEYLK RCCETLTEEN RRLQKELQEL RALKSSQPFY MQLPATTLTM CPSCERVAST  300
STAATANTNV TSPPAAAADI ANTTLSLAKP RQTQMVPFSP LQVQGPQAAL *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1232240RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027066527.10.0homeobox-leucine zipper protein HOX11
SwissprotP466653e-91HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A068URD40.0A0A068URD4_COFCA; Uncharacterized protein
STRINGVIT_08s0007g06670.t011e-140(Vitis vinifera)
STRINGPOPTR_0016s05890.11e-140(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.14e-70homeobox from Arabidopsis thaliana