PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g15990
Common NameGSCOC_T00030749001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family C3H
Protein Properties Length: 292aa    MW: 30223.4 Da    PI: 9.8855
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g15990genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.77.4e-073660226
                 -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                 k ++C  f+ t  C++G++C+F H 
  Cc06_g15990 36 KSKPCTKFFSTAGCPFGESCHFLHH 60
                 7789********************6 PP
2zf-CCCH27.55.3e-0999123226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  kt++C+ +     Ck+Gd+C+FaHg
  Cc06_g15990  99 KTKICNKYNTAEGCKFGDKCHFAHG 123
                  89**********************9 PP
3zf-CCCH31.92.3e-10258282126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  ykt+lC +fa+ G C + +rC+FaHg
  Cc06_g15990 258 YKTKLCENFAK-GSCTFAERCHFAHG 282
                  9**********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.373461IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.0093462IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-63561IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-83660IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-53660IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.50797125IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-897128IPR000571Zinc finger, CCCH-type
SMARTSM003567.9E-497124IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-1398128IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-699123IPR000571Zinc finger, CCCH-type
SuperFamilySSF547914.38E-15158235IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.102.3E-16163233IPR004088K Homology domain, type 1
SMARTSM003222.4E-12163233IPR004087K Homology domain
PROSITE profilePS5008414.529164228IPR004088K Homology domain, type 1
PfamPF000132.1E-11166230IPR004088K Homology domain, type 1
CDDcd001053.10E-14166228No hitNo description
Gene3DG3DSA:4.10.1000.101.5E-15253288IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-8256287IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.45257284IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-6257283IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-7258282IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MDIRKRNRTD SNLNANGGFK KSKPEMDSLS SGIGSKSKPC TKFFSTAGCP FGESCHFLHH  60
VPGGYNAVAQ MMNLPPAPGP RGAAAPTSVP NGAGSATVKT KICNKYNTAE GCKFGDKCHF  120
AHGDWELGKP IAPSPPHTMS AIPGRFGGRM EPVVPGPAAS FGASATAKIS VEASLAGAII  180
GKSGVNSKQI CRQTGVKLAI REHDSNPNLR NIELEGTFEQ IQQASAMVRE LIASLGPVGG  240
PGRAPAIPGG PAPPGSNYKT KLCENFAKGS CTFAERCHFA HGAAELRKSG V*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027065159.10.0zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R01e-106C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A068URA30.0A0A068URA3_COFCA; Uncharacterized protein
STRINGXP_009780696.11e-168(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8452498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.11e-60C3H family protein