PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g16040
Common NameGSCOC_T00030744001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB_related
Protein Properties Length: 743aa    MW: 81248.2 Da    PI: 9.8659
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g16040genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.15.4e-103076441
                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHT.........TTS-HHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmg.........kgRtlkqck 41
                     W t+Ed+llv+av+++G+++W+++a +++         + +t+ +c+
      Cc06_g16040 30 WGTWEDLLLVCAVNRYGTNSWESVALEIQkrstspflsLSLTPRNCQ 76
                     *****************************655555555555555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007176.2E-42685IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.7E-42961IPR009057Homeodomain-like
SuperFamilySSF466895.3E-52988IPR009057Homeodomain-like
PfamPF002491.1E-83061IPR001005SANT/Myb domain
CDDcd001671.44E-53061No hitNo description
PROSITE profilePS500906.0633083IPR017877Myb-like domain
SMARTSM002971.0E-14184435IPR001487Bromodomain
SuperFamilySSF473703.14E-18328432IPR001487Bromodomain
Gene3DG3DSA:1.20.920.108.0E-15333436IPR001487Bromodomain
CDDcd043698.53E-17337430No hitNo description
PfamPF004392.8E-11340419IPR001487Bromodomain
PROSITE profilePS5001414.127345416IPR001487Bromodomain
PROSITE patternPS006330350408IPR018359Bromodomain, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 743 aa     Download sequence    Send to blast
MAGPNGATGD YGNESEAPAE RLDSDDAAHW GTWEDLLLVC AVNRYGTNSW ESVALEIQKR  60
STSPFLSLSL TPRNCQMKYL DLTRRFLFKH DPRNTDNAYK DDDVEAAGHD GSIISTDESV  120
PLLEELRKLR VAELRRELER YDLSIVTLQS KVKKMKEERE RCSTVSEIRE EKASVLRKSE  180
EAEAPPERDA SEDKVKVIMD ELEKSPSSMA NNKDEQSVNG SVPKDGRVGE IEAGRDEDKL  240
VKEEDSGYGS SDSVEREYRK PGPESVPNEV KVEPESVSHS PELVESVAES KDGGATKSRR  300
DGENDDVPPG STKNLDLQND NSSPPVKLEA SVESQPLIDF LDHVKGHKLG SLFLRRLDSQ  360
EAPNYKSLIR QHVDLEAVRR RVKEGIYSDS NLKFFRDLLL LVNNAMVFFG KNTPEFLAAM  420
ELRHLIANEM ARRNAKSSDS SSEKQASLQK ASLPDKGSSE PSESLLRKPK LGGQLIVCRK  480
RSSIAAKASA SSSASDKKRD QNKMPTEDSA GLDSKHPSRR QQPARAEGPR VTKKRSADRF  540
ASASTSLKKN AKNGAGTNSK QMSGTNLEKN KGKGGSSSQQ PDPRCENKNN QSSADLKKRS  600
AANFLNRMKQ SSSSNNSTLL DALKGSPLSA SNNGRGGSEL KKDENSKGSG GSNLRKNEHG  660
KGGGGSEHKK NENVKWSGKK AQVSTRSSDV KQATEKTIPA TKSLGRPLNK GAAPPAPSGK  720
RGRGDRESES AASKQQRKKP RK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027068075.10.0uncharacterized protein LOC113693677
TrEMBLA0A068UR980.0A0A068UR98_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42682136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.13e-60DNA-binding bromodomain-containing protein