PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g16550
Common NameGSCOC_T00030672001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family C2H2
Protein Properties Length: 349aa    MW: 39472.9 Da    PI: 6.6633
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g16550genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.0001269291123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  + C +Cgk F  + + ++H +++
  Cc06_g16550 269 FMCRKCGKAFAVRGDWRTHEKNC 291
                  89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.1E-6185204IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.64185212IPR007087Zinc finger, C2H2
SMARTSM003550.58185207IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280187207IPR007087Zinc finger, C2H2
SuperFamilySSF576671.61E-6251289No hitNo description
Gene3DG3DSA:3.30.160.609.2E-6256289IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.808269289IPR007087Zinc finger, C2H2
SMARTSM0035549269289IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MTDPYSNFYN QWFKFNTPYP FSSSISSNHQ PPNYVQNFYY SNNCIQYNGT STSFHSHNSP  60
PSSPPLREAL PLLSLSPTRH DHGAISEEPC CQEMDMERTV HEVHEEAEAE DDDEDVTVAL  120
HIGLPNPSAA DLASVLSSSV ETTDKDHDQD GDVSAAGYHP IMNRLNKGQY WIPTPSQILI  180
GPTQFSCPVC CKTFNRYNNM QMHMWGHGSQ YRKGPESLRG TQPTGMLRLP CYCCAPGCRN  240
NIDHPRAKPL KDFRTLQTHY KRKHGIKPFM CRKCGKAFAV RGDWRTHEKN CGKLWYCICG  300
SDFKHKRSLK DHIKAFGNGH GAYGVNSFEE DDEPASEIEQ DDDQSMHS*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027066639.10.0zinc finger protein WIP2-like
SwissprotQ9SVY11e-146ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A068UP390.0A0A068UP39_COFCA; Uncharacterized protein
STRINGVIT_08s0007g08070.t011e-176(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46224133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-141C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]