PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g17700
Common NameGSCOC_T00040357001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MIKC_MADS
Protein Properties Length: 241aa    MW: 27202.1 Da    PI: 8.714
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g17700genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.23.8e-27959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 k+ien   rqvtfskRr+g+lKKA+EL +LCdaev vi+fsstgklye++s
  Cc06_g17700  9 KKIENVNSRQVTFSKRRAGLLKKAKELAILCDAEVGVIVFSSTGKLYEFAS 59
                 68***********************************************86 PP
2K-box62.51.6e-21811709100
        K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                   e++++++ q +++ Lk+ei +Lq  qR++ G++L+ L+++eLq+Le+qL++++  ++++K+++lleq+e++  k +++  en+aLr+++ee
  Cc06_g17700  81 MENKTENEPQPQADALKSEIAKLQLVQRQMTGKELGGLNFQELQHLEHQLHEGILAVKDRKEQVLLEQLEKS--KLQKVVLENEALREQVEE 170
                  455666677899*********************************************************975..667788889999999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.113161IPR002100Transcription factor, MADS-box
CDDcd002652.28E-42277No hitNo description
SuperFamilySSF554552.88E-32287IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003199.7E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-283859IPR002100Transcription factor, MADS-box
PfamPF014862.2E-1582168IPR002487Transcription factor, K-box
PROSITE profilePS5129712.36686174IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0010047Biological Processfruit dehiscence
GO:0010262Biological Processsomatic embryogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0060862Biological Processnegative regulation of floral organ abscission
GO:0060867Biological Processfruit abscission
GO:0071365Biological Processcellular response to auxin stimulus
GO:2000692Biological Processnegative regulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MGRGKIEIKK IENVNSRQVT FSKRRAGLLK KAKELAILCD AEVGVIVFSS TGKLYEFAST  60
RMEQILARYN TNPESSKLIT MENKTENEPQ PQADALKSEI AKLQLVQRQM TGKELGGLNF  120
QELQHLEHQL HEGILAVKDR KEQVLLEQLE KSKLQKVVLE NEALREQVEE YRLRLYRENG  180
QLGRKNSGVC SSTVCDCRSE KDGNSDTSLR LGLSVDICHK RKKPKTESTS NDSETLTVLE  240
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A6e-22188194MEF2C
5f28_B6e-22188194MEF2C
5f28_C6e-22188194MEF2C
5f28_D6e-22188194MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
UniProtProbable transcription factor involved in the negative regulation of flowering, probably through the photoperiodic pathway. Prevents premature flowering. Downstream regulator of a subset of the MIKC* MADS-controlled genes required during pollen maturation. {ECO:0000269|PubMed:17521410, ECO:0000269|PubMed:18034896, ECO:0000269|PubMed:18799658}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00508DAPTransfer from AT5G13790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027069013.11e-175MADS-box transcription factor 23-like isoform X2
SwissprotQ392959e-59AGL15_BRANA; Agamous-like MADS-box protein AGL15
SwissprotQ9M2K88e-59AGL18_ARATH; Agamous-like MADS-box protein AGL18
TrEMBLA0A068V0101e-173A0A068V010_COFCA; Uncharacterized protein
STRINGXP_009758657.14e-89(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57390.13e-46AGAMOUS-like 18