PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g19040
Common NameGSCOC_T00028952001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family HSF
Protein Properties Length: 162aa    MW: 17682.8 Da    PI: 9.4228
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g19040genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind72.29.7e-2380138260
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60 
                   Fl k+y+i++++e++++isws++g+sf+v+d+++f  +vL kyF+h+nfaSF+ QLn+Y
   Cc06_g19040  80 FLLKVYDIVKNPETESIISWSSSGTSFIVWDPHRFVAEVLGKYFRHNNFASFICQLNTY 138
                   9********************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.5E-2571140IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.6E-2076159IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.18E-2178139IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.0E-1280103IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004479.7E-2080139IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-12118130IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-12131143IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MEANQETSEV TNSTKYELKN GENEGERLNP TIPMGTDVSE SSSNAIVTAA TAVSATPLAK  60
EGYANGASSS SSRVRAPPPF LLKVYDIVKN PETESIISWS SSGTSFIVWD PHRFVAEVLG  120
KYFRHNNFAS FICQLNTYVK RSIGIDWNSR MRGSKKGRRV G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B8e-18781432792Heat shock factor protein 1
5d5v_B8e-18781432792Heat shock factor protein 1
5d5v_D8e-18781432792Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269|PubMed:16202242}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:16202242}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027174269.12e-68heat stress transcription factor A-2d-like
SwissprotQ338B02e-24HFA2C_ORYSJ; Heat stress transcription factor A-2c
TrEMBLA0A068UPI11e-115A0A068UPI1_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1603026
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17750.11e-17heat shock factor 1
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Singh A, et al.
    OsHsfA2c and OsHsfB4b are involved in the transcriptional regulation of cytoplasmic OsClpB (Hsp100) gene in rice (Oryza sativa L.).
    Cell Stress Chaperones, 2012. 17(2): p. 243-54
    [PMID:22147560]