PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc06_g21910

Common Name

GSCOC_T00015604001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

Nin-like

Protein Properties

Length: 173aa MW: 18915.1 Da PI: 6.1092

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc06_g21910	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	37.2	5.7e-12	131	172	2	43
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkR 43 e i+ e l++ +++ +AAk L+v ++LKr+CR+yGI R Cc06_g21910 131 ERGITRELLEQISTMNLVEAAKFLDVTRSTLKRKCREYGICR 172 567999**********************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	7.77E-5	131	170	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.5E-5	131	170	IPR009057	Homeodomain-like
Pfam	PF02042	5.8E-8	134	172	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MMQLDFSSQQ VDAANGQQNG VVGSPPRTEH AQGFVNISYQ ELMAVNFDAS NVAGVDAAKN 60 SMNGIYEQQN GIVGSSSGQE LLQNIVHVAH HEPILEFDVA NPSKDGANIK QSNNEETNSR 120 KQKSSCTLRS ERGITRELLE QISTMNLVEA AKFLDVTRST LKRKCREYGI CR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027174632.1	5e-63	protein NLP7-like
TrEMBL	A0A068V521	1e-125	A0A068V521_COFCA; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4897	4	26