PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g22030
Common NameGSCOC_T00009008001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family Nin-like
Protein Properties Length: 214aa    MW: 24573.7 Da    PI: 6.3724
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g22030genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK63.43.8e-204693552
       RWP-RK  5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52
                 i+ e+l+++   +++dAAk++gv+ ++LKriCR+yGI+RWP Rk +++
  Cc06_g22030 46 ITREVLEQNSTRKLEDAAKNIGVSRSTLKRICREYGIHRWPPRKARKI 93
                 899*****************************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151914.18629113IPR003035RWP-RK domain
PfamPF020425.9E-174693IPR003035RWP-RK domain
Gene3DG3DSA:1.10.10.605.0E-45282IPR009057Homeodomain-like
SuperFamilySSF542774.25E-15117205No hitNo description
SMARTSM006661.9E-12126208IPR000270PB1 domain
PROSITE profilePS5174517.288126208IPR000270PB1 domain
PfamPF005645.2E-15127207IPR000270PB1 domain
CDDcd059921.79E-14129205No hitNo description
Gene3DG3DSA:3.10.20.2407.0E-13129207No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MVSIEHDEPI VEDPQRDGAS IEQGDNEVTN LKVQKPSCTL KSDLGITREV LEQNSTRKLE  60
DAAKNIGVSR STLKRICREY GIHRWPPRKA RKINQAFAEQ KIVQHSTEDT HEPHQSGAAR  120
LEDDNGMWVK VEYQGFMIKF RLPFSARKID LEEKVAQRLN LPVGSFKIEY QDEDDDRIRI  180
TCDEDLRTFM SSLSSLGRTT IKMYIVEDSP NRR*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027174643.11e-131protein NLP7-like
RefseqXP_027177039.11e-134protein NLP5-like
TrEMBLA0A068V5751e-157A0A068V575_COFCA; Uncharacterized protein
TrEMBLA0A068VG281e-157A0A068VG28_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4897426
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20640.27e-15Nin-like family protein